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io.github.cyanheads/paleobiology-mcp-server

cyanheads Scanned 20d ago

Search fossil occurrences, taxon ranges, diversity through deep time, and the geologic time scale.

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Versions

0.2.0latest
first seen Jun 30, 2026

Tools 8

paleobiology_dataframe_drop
annotations: verified low

Drop a single staged table from a DataCanvas to free memory before its TTL expires. Reference

input object output object table_name string
readOnlyHint false openWorldHint false idempotentHint true destructiveHint true
paleobiology_get_diversity
annotations: verified low

Compute a diversity / origination / extinction curve for a clade across geologic time, binned

input object
readOnlyHint true openWorldHint true idempotentHint true
paleobiology_list_intervals
annotations: verified low

Look up the geologic time scale — eons, eras, periods, epochs, and ages with their

input object output object
readOnlyHint true openWorldHint true idempotentHint true
paleobiology_dataframe_query
annotations: verified low

Run a read-only SQL SELECT against occurrence result sets staged on a DataCanvas by

input object
readOnlyHint true openWorldHint false idempotentHint true
paleobiology_dataframe_describe
annotations: verified low

List the tables and their columns staged on a DataCanvas by paleobiology_search_occurrences.

kind string type string input object output object row_count number
readOnlyHint true openWorldHint false idempotentHint true
paleobiology_search_occurrences
annotations: verified low

Search fossil occurrences filtered by taxon, geologic time, geography, and depositional

input object
readOnlyHint true openWorldHint true idempotentHint true
paleobiology_search_collections
annotations: verified low

Find fossil collections (localities) by area and geologic time — "what has been dug up here, and

input object
readOnlyHint true openWorldHint true idempotentHint true
paleobiology_get_taxon
annotations: verified low

Resolve a taxon by name (e.g. "Tyrannosaurus") or by integer taxon_no to its accepted name,

input object attribution string
readOnlyHint true openWorldHint true idempotentHint true

Permissions 2

shell high
Server uses shell capabilities via: child_process, spawn(), spawnSync()
env_vars low
Server uses env_vars capabilities via: process.env

Scan Findings 25

info
Tool 'paleobiology_dataframe_drop' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_get_diversity' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_list_intervals' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_dataframe_query' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_dataframe_describe' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_search_occurrences' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_search_collections' annotations are consistent annotation_checker · 80%
info
Tool 'paleobiology_get_taxon' annotations are consistent annotation_checker · 80%
info
Sandbox failed to start for behavioral verification behavioral_verifier · 100%
info
package.json metadata manifest_parser · 100%
info
Tool: paleobiology_dataframe_drop manifest_parser · 75%
info
Tool: paleobiology_get_diversity manifest_parser · 75%
info
Tool: paleobiology_list_intervals manifest_parser · 75%
info
Tool: paleobiology_dataframe_query manifest_parser · 75%
info
Tool: paleobiology_dataframe_describe manifest_parser · 75%
info
Tool: paleobiology_search_occurrences manifest_parser · 75%
info
Tool: paleobiology_search_collections manifest_parser · 75%
info
Tool: paleobiology_get_taxon manifest_parser · 75%
info
Required env vars (4) manifest_parser · 80%
info
Sandbox failed to start for output poisoning scan output_poisoning · 100%
high
Permission: shell access detected permission_analyzer · 95%
low
Permission: env_vars access detected permission_analyzer · 90%
info
SBOM generated: 12 components sbom_generator · 100%
high
Hardcoded Password found in cyanheads-paleobiology-mcp-server-053724b/framework-skills/api-utils/references/security.md secret_scanner · 65%
medium
No build provenance detected (SLSA L0) slsa_assessor · 90%