io.github.cyanheads/ensembl-mcp-server
Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.
Versions
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Tools 7
ensembl_query_region Find genomic features overlapping a chromosomal region: genes, transcripts, variants, regulatory
ensembl_get_sequence Fetch the DNA, cDNA, CDS, or protein sequence for a gene, transcript, protein, or genomic region.
ensembl_lookup_gene Resolve a gene by symbol + species (or by stable ID) to its Ensembl ID, genomic location
ensembl_predict_variant Predict the functional consequences of a sequence variant using the Ensembl Variant Effect Predictor (VEP).
ensembl_get_xrefs Retrieve cross-database references for a gene or feature — HGNC, UniProt, EntrezGene, OMIM,
ensembl_get_homology Find orthologs and/or paralogs of a gene across species. Returns each homolog's stable ID, species,
ensembl_list_species List species supported by Ensembl with display name, common name, assembly, taxon ID, and division.
Permissions 3
network medium shell high env_vars low